Spent time
Total: 240.90 hours
| Date | Member | Activity | Project | Issue | Comment | Hours | |
|---|---|---|---|---|---|---|---|
| 05/30/2011 | Sonya Alexandrova | Documentation | Protein analysis engine | Task #2132: Diploma presentation | 6.00 | ||
| 05/24/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2218: generate data for machine learning | 1.00 | ||
| 05/23/2011 | Evgeny Kalishenko | Development | Protein analysis engine | Task #2221: Process all aminoacids in protein functionality | Some refactoring and new processProtein method for processing all aminoacids without visualization | 2.00 | |
| 05/23/2011 | Evgeny Kalishenko | Development | Protein analysis engine | Bug #2163: org.eclipse.swt.SWTError after several steps | Using Sleak to profile rcp application | 1.50 | |
| 05/22/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #2143: rotate dodecahedron to side chain | used Protein3D to check validity of chosen rotation atoms | 1.00 | |
| 05/22/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #2143: rotate dodecahedron to side chain | used Protein3D to check validity of chosen rotation atoms | 1.00 | |
| 05/22/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2218: generate data for machine learning | 6.00 | ||
| 05/22/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #1627: Define a set of learning parameters | 1.00 | ||
| 05/22/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #1953: Learning subsystem architecture | 2.00 | ||
| 05/21/2011 | Sonya Alexandrova | Documentation | Protein analysis engine | Task #2104: Describe positioning algorithms | http://osll.spb.ru/projects/genecode/wiki/Positioning | 4.00 | |
| 05/14/2011 | Sonya Alexandrova | Documentation | Protein analysis engine | Task #2131: Diploma plan-prospect | 3.00 | ||
| 05/11/2011 | Evgeny Kalishenko | Development | Protein analysis engine | Bug #2159: some atom types are broken | pdb_atomtypes bug (?) passed round. http://sourceforge.net/mailarchive/message.php?msg_id=27206678 | 2.50 | |
| 05/09/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2143: rotate dodecahedron to side chain | 4.00 | ||
| 05/09/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2129: Show rotation axis | 1.50 | ||
| 05/09/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2143: rotate dodecahedron to side chain | 4.00 | ||
| 05/06/2011 | Evgeny Kalishenko | Research | Protein analysis engine | Task #2144: choose vector 3d editor | Inkscape is what we need. Some examples of svg dodecahedrons from internet added as attachments | 0.50 | |
| 05/05/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2103: zoom dodecadron for smart positioning | 2.00 | ||
| 05/05/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2100: correct position when switching "move dodecahed... | 2.00 | ||
| 05/05/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2102: Refactor dodecahedron functions | all logic for moving the dodecahedron is now in JmolPanelManager | 1.00 | |
| 05/04/2011 | Sonya Alexandrova | Development | Protein analysis engine | Bug #2152: dodecahedron is distorted | 2.00 | ||
| 05/04/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2102: Refactor dodecahedron functions | moved all dodecahedron-moving logic from listeners to JmolPanelManager | 1.50 | |
| 05/04/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2100: correct position when switching "move dodecahed... | implemented rotation and translation for new method; zoom still to be implemented | 4.00 | |
| 05/04/2011 | Evgeny Kalishenko | Research | Protein analysis engine | Task #2144: choose vector 3d editor | Try to use Inkscape | 0.50 | |
| 05/03/2011 | Sonya Alexandrova | Development | Protein analysis engine | Bug #2099: dodecahedron isn't always positioned smartly | 1.50 | ||
| 05/03/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2100: correct position when switching "move dodecahed... | introduced new method for moving the dodecahedron, which still has some problems, but completely removes the problem of "on/off" since it doesn't involve using buttons for actions - just uses the duplicate panel | 3.00 | |
| 05/01/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2130: Rotation aroud the main axis | 3.50 | ||
| 05/01/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #2104: Describe positioning algorithms | trying to figure out how to make illustrations in 3d editor (no progress) | 1.50 | |
| 04/29/2011 | Sonya Alexandrova | Development | Protein analysis engine | Bug #2099: dodecahedron isn't always positioned smartly | now positioning works, but rotation doesn't | 2.00 | |
| 04/29/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2102: Refactor dodecahedron functions | moved all dodecahedron manipulation from Jmol<..>Editor to JmolPanelManager, but this is not very convenient | 0.50 | |
| 04/29/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2129: Show rotation axis | showing axes for basic rotation (_not_ rotation to side chain) | 1.00 | |
| 04/29/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #2143: rotate dodecahedron to side chain | added base rotation function | 1.00 | |
| 04/25/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #1627: Define a set of learning parameters | Discussed learning parameters and made a wiki page (http://osll.spb.ru/projects/genecode/wiki/Learning) | 4.00 | |
| 04/25/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #1953: Learning subsystem architecture | Wiki page: http://osll.spb.ru/projects/genecode/wiki/Learning | 4.00 | |
| 04/19/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1999: Coordinates transformation | Coordinates transformation is now done in JmolPanelManager | 3.00 | |
| 04/19/2011 | Sonya Alexandrova | Development | Protein analysis engine | Feature #1608: Manual mode for dodecahedron | implemented moving and rotation | 4.00 | |
| 04/19/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1980: Commit Jmol.jar into github | sent patch to Egon | 1.00 | |
| 04/19/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1998: Mark dodecahedron verticies | 2.00 | ||
| 04/19/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1996: Calculate center of model position | 7.00 | ||
| 04/19/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1997: Precise dodecahedron positioning | 3.00 | ||
| 04/19/2011 | Evgeny Kalishenko | Development | Protein analysis engine | Bug #2101: translate zoom events to duplicate panel | Zoom listener implemented with the same scale coefficient | 1.00 | |
| 04/12/2011 | Evgeny Kalishenko | Research | Protein analysis engine | Task #1606: Show protein outline | Understand outline adapters etc. | 1.00 | |
| 04/12/2011 | Evgeny Kalishenko | Research | Protein analysis engine | Task #2057: investigate why dodecahedron disappears when du... | Dodecahedron should be moved using it's center, not atoms | 0.50 | |
| 04/01/2011 | Evgeny Kalishenko | Development | Protein analysis engine | Task #2046: add info about CA atoms to molecule | Metafata exists in CML format, but is not wisible in Jmol | 2.00 | |
| 04/01/2011 | Sonya Alexandrova | Research | Protein analysis engine | Task #1995: Understand positioning principals | wrote the two (of the three) main principles of positioning the dodecahedron | 1.00 | |
| 04/01/2011 | Evgeny Kalishenko | Research | Protein analysis engine | Task #2046: add info about CA atoms to molecule | Now in ModelSet.atomNames one can see original atom names | 0.50 | |
| 03/24/2011 | Evgeny Kalishenko | Research | Protein analysis engine | Task #2023: get new Jmol.jar with egit | Use egit and Team->Switch to remote master, or Synchronize->Override | 0.30 | |
| 03/22/2011 | Evgeny Kalishenko | Bug-fixing | Protein analysis engine | Bug #1979: duplicate view isn't restored | Now state is saved not only in single, but between multiple editors | 1.50 | |
| 03/21/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1977: Rejar Jmol.jar | repackaged Jmol.jar leaving out vecmath | 2.00 | |
| 03/21/2011 | Sonya Alexandrova | Development | Protein analysis engine | Task #1978: Change Jmol plugin dependencies | 0.50 | ||
| 03/19/2011 | Evgeny Kalishenko | Development | Protein analysis engine | Bug #1979: duplicate view isn't restored | Implementation is not so obvious as expected to be... | 2.00 |